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Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays.

Identifieur interne : 003653 ( Main/Exploration ); précédent : 003652; suivant : 003654

Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays.

Auteurs : Minjie Wang [République populaire de Chine] ; Xiaoli Qi ; Shutang Zhao ; Shougong Zhang ; Meng-Zhu Lu

Source :

RBID : pubmed:19426563

Descripteurs français

English descriptors

Abstract

BACKGROUND

Wood is the end product of secondary vascular system development, which begins from the cambium. The wood formation process includes four major stages: cell expansion, secondary wall biosynthesis, lignification, and programmed cell death. Transcriptional profiling is a rapid way to screen for genes involved in these stages and their transitions, providing the basis for understanding the molecular mechanisms that control this process.

RESULTS

In this study, cDNA microarrays were prepared from a subtracted cDNA library (cambium zone versus leaf) of Chinese white poplar (Populus tomentosa Carr.) and employed to analyze the transcriptional profiles during the regeneration of the secondary vascular system, a platform established in our previous study. Two hundred and seven genes showed transcript-level differences at the different regeneration stages. Dramatic transcriptional changes were observed at cambium initiation, cambium formation and differentiation, and xylem development, suggesting that these up- or downregulated genes play important roles in these stage transitions. Transcription factors such as AUX/IAA and PINHEAD, which were previously shown to be involved in meristem and vascular tissue differentiation, were strongly transcribed at the stages when cambial cells were initiated and underwent differentiation, whereas genes encoding MYB proteins and several small heat shock proteins were strongly transcribed at the stage when xylem development begins.

CONCLUSION

Employing this method, we observed dynamic changes in gene transcript levels at the key stages, including cambium initiation, cambium formation and differentiation, and xylem development, suggesting that these up- or downregulated genes are strongly involved in these stage transitions. Further studies of these genes could help elucidate their roles in wood formation.


DOI: 10.1186/1471-2164-10-215
PubMed: 19426563
PubMed Central: PMC2685409


Affiliations:


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Le document en format XML

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<term>Gene Expression Profiling (MeSH)</term>
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<term>Genes, Plant (MeSH)</term>
<term>Genes, myb (MeSH)</term>
<term>Heat-Shock Proteins (metabolism)</term>
<term>Oligonucleotide Array Sequence Analysis (MeSH)</term>
<term>Populus (genetics)</term>
<term>Populus (growth & development)</term>
<term>RNA, Plant (genetics)</term>
<term>Transcription Factors (metabolism)</term>
<term>Wood (genetics)</term>
<term>Wood (growth & development)</term>
<term>Xylem (genetics)</term>
<term>Xylem (growth & development)</term>
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<term>ARN des plantes (génétique)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Bois (croissance et développement)</term>
<term>Bois (génétique)</term>
<term>Facteurs de transcription (métabolisme)</term>
<term>Gènes de plante (MeSH)</term>
<term>Gènes myb (MeSH)</term>
<term>Populus (croissance et développement)</term>
<term>Populus (génétique)</term>
<term>Protéines du choc thermique (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Séquençage par oligonucléotides en batterie (MeSH)</term>
<term>Xylème (croissance et développement)</term>
<term>Xylème (génétique)</term>
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<term>Transcription Factors</term>
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<term>Bois</term>
<term>Populus</term>
<term>Xylème</term>
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<term>Populus</term>
<term>Wood</term>
<term>Xylem</term>
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<term>Populus</term>
<term>Wood</term>
<term>Xylem</term>
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<term>Bois</term>
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<term>Xylème</term>
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<b>BACKGROUND</b>
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<p>Wood is the end product of secondary vascular system development, which begins from the cambium. The wood formation process includes four major stages: cell expansion, secondary wall biosynthesis, lignification, and programmed cell death. Transcriptional profiling is a rapid way to screen for genes involved in these stages and their transitions, providing the basis for understanding the molecular mechanisms that control this process.</p>
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<p>
<b>RESULTS</b>
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<p>In this study, cDNA microarrays were prepared from a subtracted cDNA library (cambium zone versus leaf) of Chinese white poplar (Populus tomentosa Carr.) and employed to analyze the transcriptional profiles during the regeneration of the secondary vascular system, a platform established in our previous study. Two hundred and seven genes showed transcript-level differences at the different regeneration stages. Dramatic transcriptional changes were observed at cambium initiation, cambium formation and differentiation, and xylem development, suggesting that these up- or downregulated genes play important roles in these stage transitions. Transcription factors such as AUX/IAA and PINHEAD, which were previously shown to be involved in meristem and vascular tissue differentiation, were strongly transcribed at the stages when cambial cells were initiated and underwent differentiation, whereas genes encoding MYB proteins and several small heat shock proteins were strongly transcribed at the stage when xylem development begins.</p>
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<b>CONCLUSION</b>
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<p>Employing this method, we observed dynamic changes in gene transcript levels at the key stages, including cambium initiation, cambium formation and differentiation, and xylem development, suggesting that these up- or downregulated genes are strongly involved in these stage transitions. Further studies of these genes could help elucidate their roles in wood formation.</p>
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<Citation>Proc Natl Acad Sci U S A. 1996 Aug 20;93(17):9282-6</Citation>
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<Citation>BMC Plant Biol. 2004 Aug 18;4:14</Citation>
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<name sortKey="Zhang, Shougong" sort="Zhang, Shougong" uniqKey="Zhang S" first="Shougong" last="Zhang">Shougong Zhang</name>
<name sortKey="Zhao, Shutang" sort="Zhao, Shutang" uniqKey="Zhao S" first="Shutang" last="Zhao">Shutang Zhao</name>
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